46
Li JK, Tang T, Zong H, Wu EM, Zhao J, Wu RR, Zheng XN, Zhang H, Li YF, Zhou XH, Zhang CC, Zhang ZL, Zhang YH, Feng WZ, Zhou Y, Wang J, Zhu QY, Deng Q, Zheng JM, Yang L, Wei Q, Shen BR. Intelligent medicine in focus: the 5 stages of evolution in robot-assisted surgery for prostate cancer in the past 20 years and future implications. Mil Med Res. 2024 Aug 21;11(1):58. doi: 10.1186/s40779-024-00566-z. PMID: 39164787; PMCID: PMC11337898.
45
Batool Z, Kamal MA, Shen B. Advancements in triple-negative breast cancer sub-typing, diagnosis and treatment with assistance of artificial intelligence : a focused review. J Cancer Res Clin Oncol. 2024 Aug 6;150(8):383. doi: 10.1007/s00432-024-05903-2. PMID: 39103624; PMCID: PMC11300496.
44
Duan J, Li P, Shao A, Hao X, Zhou R, Bi C, Liu X, Li W, Zhu H, Chen G, Shen B, Zhu T. PPCRKB: a risk factor knowledge base of postoperative pulmonary complications. Database (Oxford). 2024 Jul 19;2024:baae054. doi: 10.1093/database/baae054. PMID: 39028753; PMCID: PMC11259045.
43
Ren S, Yang L, Du J, He M, Shen B. DRGKB: a knowledgebase of worldwide diagnosis-related groups' practices for comparison, evaluation and knowledge-guided application. Database (Oxford). 2024 Jun 6;2024:baae046. doi: 10.1093/database/baae046. PMID: 38843311; PMCID: PMC11155695.
42
Zheng M, Kumar A, Sharma V, Behl T, Sehgal A, Wal P, Shinde NV, Kawaduji BS, Kapoor A, Anwer MK, Gulati M, Shen B, Singla RK, Bungau SG. Revolutionizing pediatric neuroblastoma treatment: unraveling new molecular targets for precision interventions. Front Cell Dev Biol. 2024 Mar 27;12:1353860. doi: 10.3389/fcell.2024.1353860. PMID: 38601081; PMCID: PMC11004261.
41
Yu C, Zong H, Chen Y, Zhou Y, Liu X, Lin Y, Li J, Zheng X, Min H, Shen B. PCAO2: an ontology for integration of prostate cancer associated genotypic, phenotypic and lifestyle data. Brief Bioinform. 2024 Mar 27;25(3):bbae136. doi: 10.1093/bib/bbae136. PMID: 38557678; PMCID: PMC10982949.
40
Li J, Tang T, Wu E, Zhao J, Zong H, Wu R, Feng W, Zhang K, Wang D, Qin Y, Shen Z, Qin Y, Ren S, Zhan C, Yang L, Wei Q, Shen B. RARPKB: A knowledge-guide decision support platform for personalized robot-assisted surgery in prostate cancer. Int J Surg. 2024 Mar 18. doi: 10.1097/JS9.0000000000001290. Epub ahead of print. PMID: 38498357.
39
Xue L, Singla RK, He S, Arrasate S, González-Díaz H, Miao L, Shen B. Warfarin-A natural anticoagulant: A review of research trends for precision medication. Phytomedicine. 2024 Jun;128:155479. doi: 10.1016/j.phymed.2024.155479. Epub 2024 Feb 23. PMID: 38493714.
38
Gautam RK, Tripathi SM, Akash S, Sharma S, Sharma K, Goyal S, Behzad S, Gundamaraju R, Mishra DK, Zhang Y, Shen B, Sundriyal S, Singla RK. Unlocking the Immunomodulatory Potential of Rosmarinic Acid Isolated from Punica granatum L. Using Bioactivity-Guided Approach: In Silico, In Vitro, and In Vivo Approaches. Curr Med Chem. 2024 Mar 5. doi: 10.2174/0109298673291064240227094654. Epub ahead of print. PMID: 38445701.
37
Zong H, Li J, Wu E, Wu R, Lu J, Shen B. Performance of ChatGPT on Chinese national medical licensing examinations: a five-year examination evaluation study for physicians, pharmacists and nurses. BMC Med Educ. 2024 Feb 14;24(1):143. doi: 10.1186/s12909-024-05125-7. PMID: 38355517; PMCID: PMC10868058.
36
Wang S, Shen B, Guo L, Shang M, Liu J, Sun Q, Shen B. scFed: federated learning for cell type classification with scRNA-seq. Brief Bioinform. 2023 Nov 22;25(1):bbad507. doi: 10.1093/bib/bbad507. PMID: 38221903; PMCID: PMC10788680.
35
Wu E, Fan X, Tang T, Li J, Wang J, Liu X, Zungar Z, Ren J, Wu C, Shen B. Biomarkers discovery for endometrial cancer: A graph convolutional sample network method. Comput Biol Med. 2022 Nov;150:106200. doi: 10.1016/j.compbiomed.2022.106200. Epub 2022 Oct 13. PMID: 37859290.
34
Li J, Fan X, Tang T, Wu E, Wang D, Zong H, Zhou X, Li Y, Zhang C, Zhang Y, Wu R, Wu C, Yang L, Shen B. An artificial intelligence method for predicting postoperative urinary incontinence based on multiple anatomic parameters of MRI. Heliyon. 2023 Sep 20;9(10):e20337. doi: 10.1016/j.heliyon.2023.e20337. PMID: 37767466; PMCID: PMC10520312.
33
Li J, Zhang Z, Zhang C, Zhu Q, Zhao J, Zong H, Deng Q, Zheng J, Wu E, Wu R, Tang T, Zhang Y, Dong Q, Li Y, Wang J, Yang L, Qiu S, Shen B, Wei Q. Association Between Urinary Bisphenols and Body Composition Among American Adults: Cross-Sectional National Health and Nutrition Examination Survey Study. JMIR Public Health Surveill. 2023 Sep 19;9:e49652. doi: 10.2196/49652. PMID: 37615638; PMCID: PMC10548327.
32
Zhang C, Zhang X, Sun Z, Liu X, Shen B. MetaSepsisBase: a biomarker database for systems biological analysis and personalized diagnosis of heterogeneous human sepsis. Intensive Care Med. 2023 Jun 17. doi: 10.1007/s00134-023-07126-4. Epub ahead of print. PMID: 37329364.
31
Zhan C, Liu K, Zhang Y, Zhang Y, He M, Wu R, Bi C, Shen B. Myocardial infarction unveiled: Key miRNA players screened by a novel lncRNA-miRNA-mRNA network model. Comput Biol Med. 2023 Apr 28;160:106987. doi: 10.1016/j.compbiomed.2023.106987. Epub ahead of print. PMID: 37141653.
30
Shen K, Din AU, Sinha B, Zhou Y, Qian F, Shen B. Translational informatics for human microbiota: data resources, models and applications. Brief Bioinform. 2023 May 4:bbad168. doi: 10.1093/bib/bbad168. Epub ahead of print. PMID: 37141135.
29
Singla RK, Joon S, Sinha B, Kamal MA, Simal-Gandara J, Xiao J, Shen B. Current trends in natural products for the treatment and management of dementia: Computational to clinical studies. Neurosci Biobehav Rev. 2023 Apr;147:105106. doi: 10.1016/j.neubiorev.2023.105106. Epub 2023 Feb 23. PMID: 36828163.
28
Xue L, Ding Y, Qin Q, Liu L, Ding X, Zhou Y, Liu K, Singla RK, Shen K, Din AU, Zhang Y, Shen Z, Shen B, Miao L. Assessment of the impact of intravenous antibiotics treatment on gut microbiota in patients: Clinical data from pre-and post-cardiac surgery. Front Cell Infect Microbiol. 2023 Jan 19;12:1043971. doi: 10.3389/fcimb.2022.1043971. PMID: 36741975; PMCID: PMC9896080.
27
Liu K, Zhang Y, Martin C, Ma X, Shen B. Translational Bioinformatics for Human Reproductive Biology Research: Examples, Opportunities and Challenges for a Future Reproductive Medicine. Int J Mol Sci. 2022 Dec 20;24(1):4. doi: 10.3390/ijms24010004. PMID: 36613446.
26
Singla RK, De R, Efferth T, Mezzetti B, Sahab Uddin M, Sanusi, Ntie-Kang F, Wang D, Schultz F, Kharat KR, Devkota HP, Battino M, Sur D, Lordan R, Patnaik SS, Tsagkaris C, Sai CS, Tripathi SK, Găman MA, Ahmed MEO, González-Burgos E, Babiaka SB, Paswan SK, Odimegwu JI, Akram F, Simal-Gandara J, Urquiza MS, Tikhonov A, Mondal H, Singla S, Lonardo SD, Mulholland EJ, Cenanovic M, Maigoro AY, Giampieri F, Lee S, Tzvetkov NT, Louka AM, Verma P, Chopra H, Olea SP, Khan J, Alvarez Suarez JM, Zheng X, Tomczyk M, Sabnani MK, Medina CDV, Khalid GM, Boyina HK, Georgiev MI, Supuran CT, Sobarzo-Sánchez E, Fan TP, Pittala V, Sureda A, Braidy N, Russo GL, Vacca RA, Banach M, Lizard G, Zarrouk A, Hammami S, Orhan IE, Aggarwal BB, Perry G, Miller MJ, Heinrich M, Bishayee A, Kijjoa A, Arkells N, Bredt D, Wink M, Fiebich BL, Kiran G, Yeung AWK, Gupta GK, Santini A, Lucarini M, Durazzo A, El-Demerdash A, Dinkova-Kostova AT, Cifuentes A, Souto EB, Zubair MAM, Badhe P, Echeverría J, Horbańczuk JO, Horbanczuk OK, Sheridan H, Sheshe SM, Witkowska AM, Abu-Reidah IM, Riaz M, Ullah H, Oladipupo AR, Lopez V, Sethiya NK, Shrestha BG, Ravanan P, Gupta SC, Alzahrani QE, Dama Sreedhar P, Xiao J, Moosavi MA, Subramani PA, Singh AK, Chettupalli AK, Patra JK, Singh G, Karpiński TM, Al-Rimawi F, Abiri R, Ahmed AF, Barreca D, Vats S, Amrani S, Fimognari C, Mocan A, Hritcu L, Semwal P, Shiblur Rahaman M, Emerald M, Akinrinde AS, Singh A, Joshi A, Joshi T, Khan SY, Balla GOA, Lu A, Pai SR, Ghzaiel I, Acar N, Es-Safi NE, Zengin G, Kureshi AA, Sharma AK, Baral B, Rani N, Jeandet P, Gulati M, Kapoor B, Mohanta YK, Emam-Djomeh Z, Onuku R, Depew JR, Atrooz OM, Goh BH, Andrade JC, Konwar B, Shine VJ, Ferreira JMLD, Ahmad J, Chaturvedi VK, Skalicka-Woźniak K, Sharma R, Gautam RK, Granica S, Parisi S, Kumar R, Atanasov AG, Shen B. The International Natural Product Sciences Taskforce (INPST) and the power of Twitter networking exemplified through #INPST hashtag analysis. Phytomedicine. 2022 Oct 22;108:154520. doi: 10.1016/j.phymed.2022.154520. Epub ahead of print. PMID: 36334386.
25
Tang T, Liu X, Wu R, Shen L, Ren S, Shen B. CTRR-ncRNA: A Knowledgebase for Cancer Therapy Resistance and Recurrence Associated Non-coding RNAs. Genomics Proteomics Bioinformatics. 2022 Oct 17:S1672-0229(22)00131-0. doi: 10.1016/j.gpb.2022.10.003. Epub ahead of print. PMID: 36265769.
24
Bi C, Zhou S, Liu X, Zhu Y, Yu J, Zhang X, Shi M, Wu R, He H, Zhan C, Lin Y, Shen B. NDDRF: A risk factor knowledgebase for personalized prevention of neurodegenerative diseases. J Adv Res. 2022 Sep;40:223-231. doi: 10.1016/j.jare.2021.06.015. Epub 2021 Jun 20. PMID: 36100329; PMCID: PMC9481935.
23
Singla RK, Joon S, Shen L, Shen B. Translational Informatics for Natural Products as Antidepressant Agents. Front Cell Dev Biol. 2022 Jan 20;9:738838. doi: 10.3389/fcell.2021.738838. PMID: 35127696; PMCID: PMC8811306.
22
Ren S, Jin Y, Chen Y, Shen B. CRPMKB: a knowledge base of cancer risk prediction models for systematic comparison and personalized applications. Bioinformatics. 2021 Dec 20:btab850. doi: 10.1093/bioinformatics/btab850. Epub ahead of print. PMID: 34927675.
21
Okoh MP, Singla RK, Madu C, Soremekun O, Adejoh J, Alli LA, Shen B. Phytomedicine in Disease Management: In-Silico Analysis of the Binding Affinity of Artesunate and Azadirachtin for Malaria Treatment. Front Pharmacol. 2021 Nov 30;12:751032. doi: 10.3389/fphar.2021.751032. PMID: 34916935; PMCID: PMC8669099.
20
Zhan C, Zhang Y, Liu X, Wu R, Zhang K, Shi W, Shen L, Shen K, Fan X, Ye F, Shen B. MIKB: A manually curated and comprehensive knowledge base for myocardial infarction. Comput Struct Biotechnol J. 2021 Nov 16;19:6098-6107. doi: 10.1016/j.csbj.2021.11.011. PMID: 34900127; PMCID: PMC8626632.
19
Yang L, Liu X, Chen Y, Shen B. An update on the CHDGKB for the systematic understanding of risk factors associated with non-syndromic congenital heart disease. Comput Struct Biotechnol J. 2021 Oct 13;19:5741-5751. doi: 10.1016/j.csbj.2021.10.017. PMID: 34765091; PMCID: PMC8556603.
18
Singla RK, Sharma P, Dubey AK, Gundamaraju R, Kumar D, Kumar S, Madaan R, Shri R, Tsagkaris C, Parisi S, Joon S, Singla S, Kamal MA, Shen B. Natural Product-Based Studies for the Management of Castration-Resistant Prostate Cancer: Computational to Clinical Studies. Front Pharmacol. 2021 Oct 19;12:732266. doi: 10.3389/fphar.2021.732266. PMID: 34737700; PMCID: PMC8560712.
17
Singla RK, Gupta R, Joon S, Gupta AK, Shen B. Isolation, Docking and In silico ADME-T Studies of Acacianol: Novel Antibacterial Isoflavone Analogue Isolated from Acacia leucophloea Bark. Curr Drug Metab. 2021 Oct 4. doi: 10.2174/1389200222666211005091417. Epub ahead of print. PMID: 34636294.
16
Miao Z, Bai J, Shen L, Singla RK. The Combination of Tradition and Future: Data-Driven Natural-Product-Based Treatments for Parkinson's Disease. Evid Based Complement Alternat Med. 2021 Jul 14;2021:9990020. doi: 10.1155/2021/9990020. PMID: 34335855; PMCID: PMC8294954.
15
He H, Shi M, Lin Y, Zhan C, Wu R, Bi C, Liu X, Ren S, Shen B. HFBD: a biomarker knowledge database for heart failure heterogeneity and personalized applications. Bioinformatics. 2021 Jun 23:btab470. doi: 10.1093/bioinformatics/btab470. Epub ahead of print. PMID: 34164644.
14
Yan W, Yu C, Chen J, Zhou J, Shen B. ANCA: A Web Server for Amino Acid Networks Construction and Analysis. Front Mol Biosci. 2020 Nov 19;7:582702. doi: 10.3389/fmolb.2020.582702. PMID: 33330622; PMCID: PMC7711068.
13
Chen Y, Yu C, Liu X, Xi T, Xu G, Sun Y, Zhu F, Shen B. PCLiON: An Ontology for Data Standardization and Sharing of Prostate Cancer Associated Lifestyles. Int J Med Inform. 2020 Nov 7;145:104332. doi: 10.1016/j.ijmedinf.2020.104332. Epub ahead of print. PMID: 33186790.
12
Liu X, Zhang X, Chen J, Ye B, Ren S, Lin Y, Sun XF, Zhang H, Shen B. CRC-EBD: Epigenetic Biomarker Database for Colorectal Cancer. Front Genet. 2020 Oct 6;11:907. doi: 10.3389/fgene.2020.00907. PMID: 33133126; PMCID: PMC7573234.
11
Yang L, Yang Y, Liu X, Chen Y, Chen Y, Lin Y, Sun Y, Shen B. CHDGKB: a knowledgebase for systematic understanding of genetic variations associated with non-syndromic congenital heart disease. Database (Oxford). 2020 Jan 1;2020:baaa048. doi: 10.1093/database/baaa048. PMID: 32608479; PMCID: PMC7327432.
10
Pei Z, Shi M, Guo J, Shen B. Heart Rate Variability Based Prediction of Personalized Drug Therapeutic Response: The Present Status and the Perspectives. Curr Top Med Chem. 2020;20(18):1640-1650. doi: 10.2174/1568026620666200603105002. PMID: 32493191.
9
Shi M, He H, Geng W, Wu R, Zhan C, Jin Y, Zhu F, Ren S, Shen B. Early Detection of Sudden Cardiac Death by Using Ensemble Empirical Mode Decomposition-Based Entropy and Classical Linear Features From Heart Rate Variability Signals. Front Physiol. 2020 Feb 25;11:118. doi: 10.3389/fphys.2020.00118. PMID: 32158399; PMCID: PMC7052183.
8
Lin Y, Zhao X, Miao Z, Ling Z, Wei X, Pu J, Hou J, Shen B. Data-driven translational prostate cancer research: from biomarker discovery to clinical decision. J Transl Med. 2020 Mar 7;18(1):119. doi: 10.1186/s12967-020-02281-4. PMID: 32143723; PMCID: PMC7060655.
7
Chen Y, Liu X, Yu Y, Yu C, Yang L, Lin Y, Xi T, Ye Z, Feng Z, Shen B. PCaLiStDB: a lifestyle database for precision prevention of prostate cancer. Database (Oxford). 2020 Jan 1;2020:baz154. doi: 10.1093/database/baz154. PMID: 31950190; PMCID: PMC6966110.
6
Shen B, Lin Y, Bi C, Zhou S, Bai Z, Zheng G, Zhou J. Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations. Genomics Proteomics Bioinformatics. 2019 Aug;17(4):415-429. doi: 10.1016/j.gpb.2018.10.007. Epub 2019 Nov 28. PMID: 31786313; PMCID: PMC6943761.
5
Zhan C, Shi M, Wu R, He H, Liu X, Shen B. MIRKB: a myocardial infarction risk knowledge base. Database (Oxford). 2019 Jan 1;2019:baz125. doi: 10.1093/database/baz125. PMID: 31688939; PMCID: PMC6830040.
4
Shi M, Zhan C, He H, Jin Y, Wu R, Sun Y, Shen B. Renyi Distribution Entropy Analysis of Short-Term Heart Rate Variability Signals and Its Application in Coronary Artery Disease Detection. Front Physiol. 2019 Jun 26;10:809. doi: 10.3389/fphys.2019.00809. PMID: 31293457; PMCID: PMC6606792.
3
Zhu F, Ye F, Fu Y, Liu Q, Shen B. Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network. Sci Rep. 2019 May 1;9(1):6734. doi: 10.1038/s41598-019-42516-z. PMID: 31043666; PMCID: PMC6494992.
2
Lin Y, Wu W, Sun Z, Shen L, Shen B. MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery. RNA Biol. 2018;15(8):1093-1105. doi: 10.1080/15476286.2018.1502590. Epub 2018 Sep 17. PMID: 30081733; PMCID: PMC6161673.
1
Qian F, Guo J, Jiang Z, Shen B. Translational Bioinformatics for Cholangiocarcinoma: Opportunities and Challenges. Int J Biol Sci. 2018 May 22;14(8):920-929. doi: 10.7150/ijbs.24622. PMID: 29989102; PMCID: PMC6036745.