NDDVD - Neurodegenerative Diseases Variation Database
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All variants
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Allele
: On which allele is the variant located? Does not necessarily imply inheritance! 'Paternal' (confirmed or inferred), 'Maternal' (confirmed or inferred), 'Parent #1' or #2 for compound heterozygosity without having screened the parents, 'Unknown' for heterozygosity without having screened the parents, 'Both' for homozygozity.
DNA change (genomic) (hg19)
: Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
g.12345678C>T
g.12345678_12345890del
g.12345678_12345890dup
Reference
: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID
: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
Frequency
: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
6426 entries on 65 pages. Showing entries 1 - 100.
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Effect
Chr
DNA change (genomic) (hg19)
Reference
DB-ID
Frequency
Owner
./.
1
g.(?)
McCann EP et al. (2017)
TARDBP_000045
-
XY Liu
./.
1
g.40539204_40539207delTGAT
Mole et al. Eur J Paed Neurol 5 (Suppl A):7-102001
PPT1_000051
-
Y Yang
./.
1
g.1470750G>A
Delplanque J et al. (2014)
TMEM240_000005
-
XY Liu
./.
1
g.1470752G>A
Delplanque J et al. (2014)
TMEM240_000001
-
XY Liu
./.
1
g.1470752G>A
Zeng S et al. (2016)
TMEM240_000001
-
XY Liu
./.
1
g.1470772G>C
Delplanque J et al. (2014)
TMEM240_000006
-
XY Liu
./.
1
g.1470816C>T
Delplanque J et al. (2014)
TMEM240_000004
-
XY Liu
./.
1
g.1470996G>A
Delplanque J et al. (2014)
TMEM240_000003
-
XY Liu
./.
1
g.1471103G>A
Delplanque J et al. (2014)
TMEM240_000002
-
XY Liu
./.
1
g.8021755_8021770del16
KeyS RJ, 2009
PARK7_000011
-
Y Yang
./.
1
g.8022874T>C
Guo JF, 2008
PARK7_000010
-
Y Yang
./.
1
g.8022923G>T
Abou-Sleiman PM, 2003
PARK7_000013
-
Y Yang
./.
1
g.8025408G>T
Tang B, 2006
PARK7_000012
-
Y Yang
+/.
1
g.8025426C>T
Hanagasi HA et al. (2016)
PARK7_000025
-
XY Liu
./.
1
g.8025485G>T
Hering R, 2004
PARK7_000015
-
Y Yang
./.
1
g.8029446C>T
Abou-Sleiman PM, 2003
PARK7_000014
-
Y Yang
./.
1
g.8029472_8029473insA
Tarantino P, 2009
PARK7_000017
-
Y Yang
./.
1
g.8030994G>A
Abou-Sleiman PM, 2003;Lockhart PJ, 2004;Healy DG, 2004;Clark LN, 2004;Pankratz N, 2006
PARK7_000016
-
Y Yang
./.
1
g.8030995G>A
Abou-Sleiman PM, 2003
PARK7_000019
-
Y Yang
./.
1
g.8031011G>A
Clark LN, 2004
PARK7_000018
-
Y Yang
./.
1
g.8031025_8031035del11
Hedrich K, 2004
PARK7_000021
-
Y Yang
./.
1
g.8044990A>C
Abou-Sleiman PM, 2003
PARK7_000020
-
Y Yang
./.
1
g.8045015_8045017delGCC
Macedo MG, 2009
PARK7_000023
-
Y Yang
./.
1
g.8045024C>A
Pankratz N, 2006
PARK7_000022
-
Y Yang
./.
1
g.8045031G>A
Annesi G, 2005
PARK7_000005
-
Y Yang
+?/.
1
g.8045031G>A
Grazia Annesi, Giovanni Savettieri, Pierfrancesco Pugliese, et al.
PARK7_000005
-
XY Liu
./.
1
g.8045041T>C
Bonifati V, 2003
PARK7_000006
-
Y Yang
./.
1
g.8045041T>C
Vilotti S1, Codrich M, Dal Ferro M, Pinto M, Ferrer I, Collavin L, Gustincich S, Zucchelli S.(2012)
PARK7_000006
-
Y Yang
./.
1
g.8045045A>G
Abou-Sleiman PM, 2003
PARK7_000007
-
Y Yang
./.
1
g.8045045A>T
Anvret A1, Blackinton JG, Westerlund M, Ran C, Sydow O, Willows T, H?kansson A, Nissbrandt H, Belin AC.(2011)
PARK7_000024
-
Y Yang
./.
1
g.8045055G>T
Clark LN, 2004
PARK7_000008
-
Y Yang
./.
1
g.8045067A>G
Nuytemans K, 2009
PARK7_000001
-
Y Yang
./.
1
g.8045079G>A
Macedo MG, 2009;Nuytemans K, 2009
PARK7_000002
-
Y Yang
./.
1
g.8045102T>C
Hering R, 2004
PARK7_000003
-
Y Yang
./.
1
g.8045234_8045235insA
Abou-Sleiman PM, 2003
PARK7_000004
-
Y Yang
./.
1
g.8045317G>A
Abou-Sleiman PM, 2003
PARK7_000009
-
Y Yang
./.
1
g.10318660A>T
Saito M1, Hayashi Y, Suzuki T, Tanaka H, Hozumi I, Tsuji S.(1997)
KIF1B_000001
-
Y Yang
?/.
1
g.11073841A>G
Huang R, Fang DF, Ma MY, Guo XY, Zhao B, Zeng Y, Zhou D, Yang Y, Shang HF.(2012)
TARDBP_000060
-
XY Liu
?/.
1
g.11073904G>A
Hui-Ling Xiong, Jin-Yang Wang, Yi-Min Sun, Jian-Jun Wu, Yan Chen, Kai Qiao, Qiao-Juan Zheng, Gui-Xian Zhao, Zhi-Ying Wu
TARDBP_000055
-
XY Liu
./.
1
g.11073979T>A
Guerreiro RJ1, Schymick JC, Crews C, Singleton A, Hardy J, Traynor BJ.(2008)
TARDBP_000001
-
Y Yang
./.
1
g.11073982T>C
Guerreiro RJ1, Schymick JC, Crews C, Singleton A, Hardy J, Traynor BJ.(2008)
TARDBP_000019
-
Y Yang
./.
1
g.11074107C>T
Huang R1, Fang DF, Ma MY, Guo XY, Zhao B, Zeng Y, Zhou D, Yang Y, Shang HF.(2012)
TARDBP_000040
-
Y Yang
?/.
1
g.11076883T>C
Hui-Ling Xiong, Jin-Yang Wang, Yi-Min Sun, Jian-Jun Wu, Yan Chen, Kai Qiao, Qiao-Juan Zheng, Gui-Xian Zhao, Zhi-Ying Wu
TARDBP_000054
-
XY Liu
./.
1
g.11076931C>T
Sreedharan J1, Blair IP, Tripathi VB, Hu X, Vance C, Rogelj B, Ackerley S, Durnall JC, Williams KL, Buratti E, Baralle F, de Belleroche J, Mitchell JD, Leigh PN, Al-Chalabi A, Miller CC, Nicholson G, Shaw CE.(2008)
TARDBP_000009
-
Y Yang
./.
1
g.11076931C>T
Guerreiro RJ1, Schymick JC, Crews C, Singleton A, Hardy J, Traynor BJ.(2008)
TARDBP_000009
-
Y Yang
./.
1
g.11076931C>T
Chiang HH1, Andersen PM, Tysnes OB, Gredal O, Christensen PB, Graff C.(2012)
TARDBP_000009
-
XY Liu
?/.
1
g.11076931C>T
D Czell, P M Andersen, M Morita, C Neuwirth, F Perren, M Weber (2013)
TARDBP_000009
-
XY Liu
?/.
1
g.11078791G>C
Sheng Chen, et al. (2021)
TARDBP_000066
-
XY Liu
./.
1
g.11078893A>G
Kabashi E1, Valdmanis PN, Dion P, Spiegelman D, McConkey BJ, Vande Velde C, Bouchard JP, Lacomblez L, Pochigaeva K, Salachas F, Pradat PF, Camu W, Meininger V, Dupre N, Rouleau GA.(2008)
TARDBP_000002
-
Y Yang
./.
1
g.11078981A>G
Gallone S1, Giordana MT, Scarpini E, Rainero I, Rubino E, Fenoglio P, Galimberti D, Grifoni S, Venturelli E, Acutis PL, Peletto S, Maniaci MG, Ferrero P, Zotta M, Pinessi L.(2009)
TARDBP_000041
-
Y Yang
./.
1
g.11080617A>T
Guerreiro RJ1, Schymick JC, Crews C, Singleton A, Hardy J, Traynor BJ.(2008)
TARDBP_000020
-
Y Yang
./.
1
g.11080701C>T
Borroni B1, Archetti S, Del Bo R, Papetti A, Buratti E, Bonvicini C, Agosti C, Cosseddu M, Turla M, Di Lorenzo D, Pietro Comi G, Gennarelli M, Padovani A.(2010)
TARDBP_000042
-
Y Yang
./.
1
g.11082253A>G
Kovacs GG1, Murrell JR, Horvath S, Haraszti L, Majtenyi K, Molnar MJ, Budka H, Ghetti B, Spina S.(2009)
TARDBP_000036
-
Y Yang
./.
1
g.11082253A>G
Kovacs GG1, Murrell JR, Horvath S, Haraszti L, Majtenyi K, Molnar MJ, Budka H, Ghetti B, Spina S.(2009)
TARDBP_000036
-
Y Yang
./.
1
g.11082266A>G
Borroni B1, Bonvicini C, Alberici A, Buratti E, Agosti C, Archetti S, Papetti A, Stuani C, Di Luca M, Gennarelli M, Padovani A.(2009)
TARDBP_000037
-
Y Yang
./.
1
g.11082266A>G
Borroni B1, Bonvicini C, Alberici A, Buratti E, Agosti C, Archetti S, Papetti A, Stuani C, Di Luca M, Gennarelli M, Padovani A.(2009)
TARDBP_000037
-
Y Yang
?/.
1
g.11082266A>G
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000037
-
XY Liu
?/.
1
g.11082266A>G
Shan Jin, et al. (2023)
TARDBP_000037
-
XY Liu
./.
1
g.11082325G>A
Kabashi E1, Valdmanis PN, Dion P, Spiegelman D, McConkey BJ, Vande Velde C, Bouchard JP, Lacomblez L, Pochigaeva K, Salachas F, Pradat PF, Camu W, Meininger V, Dupre N, Rouleau GA.(2008)
TARDBP_000005
-
Y Yang
?/.
1
g.11082325G>A
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000005
-
XY Liu
./.
1
g.11082335G>C
Van Deerlin VM1, Leverenz JB, Bekris LM, Bird TD, Yuan W, Elman LB, Clay D, Wood EM, Chen-Plotkin AS, Martinez-Lage M, Steinbart E, McCluskey L, Grossman M, Neumann M, Wu IL, Yang WS, Kalb R, Galasko DR, Montine TJ, Trojanowski JQ(2008)
TARDBP_000004
-
Y Yang
?/.
1
g.11082337A>C
Anna A Chami, et al. (2020)
TARDBP_000064
-
XY Liu
./.
1
g.11082341G>A
Zou ZY1, Peng Y, Wang XN, Liu MS, Li XG, Cui LY.(2012)
TARDBP_000025
-
Y Yang
+?/.
1
g.11082341G>A
Hui-Ling Xiong, Jin-Yang Wang, Yi-Min Sun, Jian-Jun Wu, Yan Chen, Kai Qiao, Qiao-Juan Zheng, Gui-Xian Zhao, Zhi-Ying Wu
TARDBP_000025
-
XY Liu
./.
1
g.11082347G>C
Sreedharan J1, Blair IP, Tripathi VB, Hu X, Vance C, Rogelj B, Ackerley S, Durnall JC, Williams KL, Buratti E, Baralle F, de Belleroche J, Mitchell JD, Leigh PN, Al-Chalabi A, Miller CC, Nicholson G, Shaw CE.(2008)
TARDBP_000011
-
Y Yang
./.
1
g.11082347G>T
McCann EP et al. (2017)
TARDBP_000044
-
XY Liu
?/.
1
g.11082347G>T
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000044
-
XY Liu
?/.
1
g.11082347G>T
K L Williams, J C Durnall, A D Thoeng, S T Warraich, G A Nicholson, I P Blair
TARDBP_000044
-
XY Liu
?/.
1
g.11082347G>T
Lucia Corrado, et al. (2020)
TARDBP_000044
-
XY Liu
?/.
1
g.11082347G>T
Feng Wang, et al. (2020)
TARDBP_000044
-
XY Liu
?/.
1
g.11082347G>T
Jinyue Li, et al. (2022)
TARDBP_000044
-
XY Liu
+/.
1
g.11082347G>T
Imen Kacem, et al. (2022)
TARDBP_000044
-
XY Liu
./.
1
g.11082349G>A
Borghero G1, Pugliatti M2, Marrosu F1, Marrosu MG3, Murru MR3, Floris G1, Cannas A1, Parish LD2, Occhineri P2, Cau TB4, Loi D4, Ticca A5, Traccis S6, (2014)
TARDBP_000035
-
Y Yang
./.
1
g.11082349G>A
Benajiba L1, Le Ber I, Camuzat A, Lacoste M, Thomas-Anterion C, Couratier P, Legallic S, Salachas F, Hannequin D, Decousus M, Lacomblez L, Guedj E, Golfier V, Camu W, Dubois B, Campion D, Meininger V(2009)
TARDBP_000035
-
Y Yang
./.
1
g.11082349G>A
Benajiba L1, Le Ber I, Camuzat A, Lacoste M, Thomas-Anterion C, Couratier P, Legallic S, Salachas F, Hannequin D, Decousus M, Lacomblez L, Guedj E, Golfietwork er V, Camu W, Dubois B, Campion D(2009)
TARDBP_000035
-
Y Yang
?/.
1
g.11082349G>A
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000035
-
XY Liu
?/.
1
g.11082349G>C
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000049
-
XY Liu
./.
1
g.11082358G>A
Van Deerlin VM1, Leverenz JB, Bekris LM, Bird TD, Yuan W, Elman LB, Clay D, Wood EM, Chen-Plotkin AS, Martinez-Lage M, Steinbart E, McCluskey L, Grossman M, Neumann M, Wu IL, Yang WS, Kalb R, Galasko DR, Montine TJ(2008)
TARDBP_000010
-
Y Yang
?/.
1
g.11082358G>A
Ichiro Nozaki, Makoto Arai, Kazuya Takahashi, et al.
TARDBP_000010
-
XY Liu
?/.
1
g.11082358G>A
Fanxi Xu, et al. (2022)
TARDBP_000010
-
XY Liu
?/.
1
g.11082359G>T
Jinyue Li, et al. (2022)
TARDBP_000067
-
XY Liu
?/.
1
g.11082397A>G
R Lemmens, V Race, N Hersmus, G Matthijs, L Van Den Bosch, P Van Damme, B Dubois, S Boonen, A Goris, W Robberecht
TARDBP_000053
-
XY Liu
./.
1
g.11082409G>A
Kabashi E1, Valdmanis PN, Dion P, Spiegelman D, McConkey BJ, Vande Velde C, Bouchard JP, Lacomblez L, Pochigaeva K, Salachas F, Pradat PF, Camu W, Meininger V, Dupre N, Rouleau GA.(2008)
TARDBP_000006
-
Y Yang
?/.
1
g.11082410C>A
Fujita Y, Ikeda M, Yanagisawa T, Senoo Y, Okamoto K.(2011)
TARDBP_000033
-
Y Yang
?/.
1
g.11082410C>A
Fujita Y, Ikeda M, Yanagisawa T, Senoo Y, Okamoto K.(2011)
TARDBP_000033
-
XY Liu
./.
1
g.11082411G>A
Guerreiro RJ1, Schymick JC, Crews C, Singleton A, Hardy J, Traynor BJ.(2008)
TARDBP_000018
-
Y Yang
?/.
1
g.11082428C>A
Orly Goldstein, et al. (2020)
TARDBP_000063
-
XY Liu
./.
1
g.11082429C>T
Huang R1, Fang DF, Ma MY, Guo XY, Zhao B, Zeng Y, Zhou D, Yang Y, Shang HF.(2012)
TARDBP_000024
-
Y Yang
./.
1
g.11082456A>T
Vrabec K1, Koritnik B2, Leonardis L2, Dolenc-Gro?elj L2, Zidar J2, Smith B3, Vance C3, Shaw C3, Rogelj B4, Glava? D1, Ravnik-Glava? M5.(2015)
TARDBP_000043
-
Y Yang
./.
1
g.11082457C>A
Sreedharan J1, Blair IP, Tripathi VB, Hu X, Vance C, Rogelj B, Ackerley S, Durnall JC, Williams KL, Buratti E, Baralle F, de Belleroche J, Mitchell JD, Leigh PN, Al-Chalabi A, Miller CC, Nicholson G, Shaw CE.(2008)
TARDBP_000012
-
Y Yang
?/.
1
g.11082460A>G
Jinyue Li, et al. (2022)
TARDBP_000068
-
XY Liu
?/.
1
g.11082461G>A
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000050
-
XY Liu
?/.
1
g.11082470G>A
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000051
-
XY Liu
./.
1
g.11082475A>G
Sreedharan J1, Blair IP, Tripathi VB, Hu X, Vance C, Rogelj B, Ackerley S, Durnall JC, Williams KL, Buratti E, Baralle F, de Belleroche J, Mitchell JD, Leigh PN, Al-Chalabi A, Miller CC, Nicholson G, Shaw CE.(2008)
TARDBP_000003
-
Y Yang
./.
1
g.11082475A>G
Tsai CP1, Soong BW, Lin KP, Tu PH, Lin JL, Lee YC.(2011)
TARDBP_000003
-
Y Yang
./.
1
g.11082475A>G
Ju X et al. (2016)
TARDBP_000003
-
XY Liu
./.
1
g.11082475A>G
McCann EP et al. (2017)
TARDBP_000003
-
XY Liu
?/.
1
g.11082475A>G
Nicola J Rutherford, Yong-Jie Zhang, Matt Baker, et al.
TARDBP_000003
-
XY Liu
?/.
1
g.11082475A>G
Lucia Corrado, A Ratti, C Gellera, E Buratti, et al.
TARDBP_000003
-
XY Liu
?/.
1
g.11082475A>G
Akira Tamaoka, Makoto Arai, Masanari Itokawa, et al.
TARDBP_000003
-
XY Liu
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