已发表文献
截至 2020-04-22


27 Lin Y, Chen F, Shen L, Tang X, Du C, Sun Z, Ding H, Chen J, Shen B. Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model. J Transl Med. 2018 May 21;16(1):134. doi: 10.1186/s12967-018-1506-7. PMID: 29784056; PMCID: PMC5963164.

26 Qian F, Guo J, Jiang Z, Shen B. Translational Bioinformatics for Cholangiocarcinoma: Opportunities and Challenges. Int J Biol Sci. 2018 May 22;14(8):920-929. doi: 10.7150/ijbs.24622. PMID: 29989102; PMCID: PMC6036745.

25 Lin Y, Wu W, Sun Z, Shen L, Shen B. MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery. RNA Biol. 2018;15(8):1093-1105. doi: 10.1080/15476286.2018.1502590. Epub 2018 Sep 17. PMID: 30081733; PMCID: PMC6161673.

24 Li T, Yang Z, Li S, Cheng C, Shen B, Le W. Alterations of NURR1 and Cytokines in the Peripheral Blood Mononuclear Cells: Combined Biomarkers for Parkinson's Disease. Front Aging Neurosci. 2018 Nov 29;10:392. doi: 10.3389/fnagi.2018.00392. PMID: 30555319; PMCID: PMC6281882.

23 Qi X, Lin Y, Chen J, Shen B. Decoding competing endogenous RNA networks for cancer biomarker discovery. Brief Bioinform. 2019 Jan 30;10.1093/bib/bbz006. doi: 10.1093/bib/bbz006. [Epub ahead of print]. PMID: 30715152.

22 Yang Z, Li T, Li S, Wei M, Qi H, Shen B, Chang RC, Le W, Piao F. Altered Expression Levels of MicroRNA-132 and Nurr1 in Peripheral Blood of Parkinson's Disease: Potential Disease Biomarkers. ACS Chem Neurosci. 2019 May 15;10(5):2243-2249. doi: 10.1021/acschemneuro.8b00460. Epub 2019 Apr 1. PMID: 30817108.

21 Zhang W, Gao Y, Long M, Shen B. Origination and evolution of orphan genes and de novo genes in the genome of Caenorhabditis elegans. Sci China Life Sci. 2019 Apr;62(4):579-593. doi: 10.1007/s11427-019-9482-0. Epub 2019 Mar 21. PMID: 30919281.

20 Long M, Shen B. Evolution of genes and genomes: an emerging paradigm in life science. Sci China Life Sci. 2019 Apr;62(4):435-436. doi: 10.1007/s11427-018-9448-x. Epub 2019 Apr 16. PMID: 30929192.

19 Yang Z, Li T, Cui Y, Li S, Cheng C, Shen B, Le W. Elevated Plasma microRNA-105-5p Level in Patients With Idiopathic Parkinson's Disease: A Potential Disease Biomarker. Front Neurosci. 2019 Mar 18;13:218. doi: 10.3389/fnins.2019.00218. PMID: 30936821; PMCID: PMC6431626.

18 Zhu F, Ye F, Fu Y, Liu Q, Shen B. Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network. Sci Rep. 2019 May 1;9(1):6734. doi: 10.1038/s41598-019-42516-z. PMID: 31043666; PMCID: PMC6494992.

17 Hohoff C, Zhang M, Ambrée O, Kravchenko M, Buschert J, Kerkenberg N, Gorinski N, Abdel Galil D, Schettler C, Vom Werth KL, Wewer MF, Schneider I, Grotegerd D, Wachsmuth L, Faber C, Skryabin BV, Brosius J, Ponimaskin E, Zhang W. Deficiency of the palmitoyl acyltransferase ZDHHC7 impacts brain and behavior of mice in a sex-specific manner. Brain Struct Funct. 2019 Jul;224(6):2213-2230. doi: 10.1007/s00429-019-01898-6. Epub 2019 Jun 10. PMID: 31183559.

16 Shi M, Zhan C, He H, Jin Y, Wu R, Sun Y, Shen B. Renyi Distribution Entropy Analysis of Short-Term Heart Rate Variability Signals and Its Application in Coronary Artery Disease Detection. Front Physiol. 2019 Jun 26;10:809. doi: 10.3389/fphys.2019.00809. PMID: 31293457; PMCID: PMC6606792.

15 Zhou J, Oldfield CJ, Yan W, Shen B, Dunker AK. Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships. Protein Sci. 2019 Sep;28(9):1652-1663. doi: 10.1002/pro.3680. Epub 2019 Aug 9. PMID: 31299122; PMCID: PMC6699093.

14 Dong C, Zeng Z, Pu DK, Wen QF, Liu S, Du MZ, Sun Y, Gao YZ, Rao N, Huang J, Guo FB. CasLocusAnno: a web-based server for annotating cas loci and their corresponding (sub)types. FEBS Lett. 2019 Sep;593(18):2646-2654. doi: 10.1002/1873-3468.13519. Epub 2019 Jul 17. PMID: 31260103.

13 Mo D, Li X, Raabe CA, Cui D, Vollmar JF, Rozhdestvensky TS, Skryabin BV, Brosius J. A universal approach to investigate circRNA protein coding function. Sci Rep. 2019 Aug 12;9(1):11684. doi: 10.1038/s41598-019-48224-y. PMID: 31406268; PMCID: PMC6690939.

12 Qi X, Yu C, Wang Y, Lin Y, Shen B. Network vulnerability-based and knowledge-guided identification of microRNA biomarkers indicating platinum resistance in high-grade serous ovarian cancer. Clin Transl Med. 2019 Oct 29;8(1):28. doi: 10.1186/s40169-019-0245-6. PMID: 31664600.

11 Zhan C, Shi M, Wu R, He H, Liu X, Shen B. MIRKB: a myocardial infarction risk knowledge base. Database (Oxford). 2019 Jan 1;2019:baz125. doi: 10.1093/database/baz125. PMID: 31688939; PMCID: PMC6830040.

10 Shen B, Lin Y, Bi C, Zhou S, Bai Z, Zheng G, Zhou J. Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations. Genomics Proteomics Bioinformatics. 2019 Aug;17(4):415-429. doi: 10.1016/j.gpb.2018.10.007. Epub 2019 Nov 28. PMID: 31786313; PMCID: PMC6943761.

9 Zheng H, Wu X, Yin J, Wang S, Li Z, You C. Clinical applications of liquid biopsies for early lung cancer detection. Am J Cancer Res. 2019 Dec 1;9(12):2567-2579. PMID: 31911847; PMCID: PMC6943362.

8 Wu R, Lin Y, Liu X, Zhan C, He H, Shi M, Jiang Z, Shen B. Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs. Database (Oxford). 2020 Jan 1;2020:baz147. doi: 10.1093/database/baz147. PMID: 31942979; PMCID: PMC6964217.

7 Chen Y, Liu X, Yu Y, Yu C, Yang L, Lin Y, Xi T, Ye Z, Feng Z, Shen B. PCaLiStDB: a lifestyle database for precision prevention of prostate cancer. Database (Oxford). 2020 Jan 1;2020:baz154. doi: 10.1093/database/baz154. PMID: 31950190; PMCID: PMC6966110.

6 Hu H, He X, Zhang Y, Wu R, Chen J, Lin Y, Shen B. MicroRNA Alterations for Diagnosis, Prognosis, and Treatment of Osteoporosis: A Comprehensive Review and Computational Functional Survey. Front Genet. 2020 Mar 3;11:181. doi: 10.3389/fgene.2020.00181. PMID: 32194637; PMCID: PMC7063117.

5 Shi M, He H, Geng W, Wu R, Zhan C, Jin Y, Zhu F, Ren S, Shen B. Early Detection of Sudden Cardiac Death by Using Ensemble Empirical Mode Decomposition-Based Entropy and Classical Linear Features From Heart Rate Variability Signals. Front Physiol. 2020 Feb 25;11:118. doi: 10.3389/fphys.2020.00118. PMID: 32158399; PMCID: PMC7052183.

4 Lin Y, Zhao X, Miao Z, Ling Z, Wei X, Pu J, Hou J, Shen B. Data-driven translational prostate cancer research: from biomarker discovery to clinical decision. J Transl Med. 2020 Mar 7;18(1):119. doi: 10.1186/s12967-020-02281-4. PMID: 32143723; PMCID: PMC7060655.

3 Gong M, Liu L, Sun X, Yang Y, Wang S, Zhu H. Cloud-Based System for Effective Surveillance and Control of COVID-19: Useful Experiences From Hubei, China. J Med Internet Res. 2020 Apr 22;22(4):e18948. doi: 10.2196/18948. PMID: 32287040; PMCID: PMC7179239.

2 Pande A, Makalowski W, Brosius J, Raabe CA. Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective. Nucleic Acids Res. 2020 Apr 17;48(7):3435-3454. doi: 10.1093/nar/gkaa026. PMID: 32133533; PMCID: PMC7144904.

1 Skryabin BV, Kummerfeld DM, Gubar L, Seeger B, Kaiser H, Stegemann A, Roth J, Meuth SG, Pavenstädt H, Sherwood J, Pap T, Wedlich-Söldner R, Sunderkötter C, Schwartz YB, Brosius J, Rozhdestvensky TS. Pervasive head-to-tail insertions of DNA templates mask desired CRISPR-Cas9-mediated genome editing events. Sci Adv. 2020 Feb 12;6(7):eaax2941. doi: 10.1126/sciadv.aax2941. PMID: 32095517; PMCID: PMC7015686.

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