NDDVD - Neurodegenerative Diseases Variation Database
LRRK2 (leucine-rich repeat kinase 2)
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Curator:
Y Yang
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View all transcripts of gene LRRK2
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View all variants affecting transcripts
View unique variants in gene LRRK2
View all variants in gene LRRK2
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View all individuals with variants in gene LRRK2
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View all diseases associated with gene LRRK2
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View all screenings for gene LRRK2
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All screenings for gene LRRK2
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
196 entries on 2 pages. Showing entries 1 - 100.
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Legend
How to query
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Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000001423
00001423
?
?
1
Y Yang
0000001429
00001429
?
?
1
Y Yang
0000002220
00002220
?
?
1
Y Yang
0000003325
00003325
?
?
1
Y Yang
0000003326
00003326
?
?
1
Y Yang
0000003327
00003327
?
?
1
Y Yang
0000003328
00003328
?
?
1
Y Yang
0000003329
00003329
?
?
1
Y Yang
0000003330
00003330
?
?
1
Y Yang
0000003331
00003331
?
?
1
Y Yang
0000003332
00003332
?
?
1
Y Yang
0000003333
00003333
?
?
1
Y Yang
0000003334
00003334
?
?
1
Y Yang
0000003335
00003335
?
?
1
Y Yang
0000003336
00003336
?
?
1
Y Yang
0000003337
00003337
?
?
1
Y Yang
0000003338
00003338
?
?
1
Y Yang
0000003339
00003339
?
?
1
Y Yang
0000003340
00003340
?
?
1
Y Yang
0000003341
00003341
?
?
1
Y Yang
0000003342
00003342
?
?
1
Y Yang
0000003343
00003343
?
?
1
Y Yang
0000003344
00003344
?
?
1
Y Yang
0000003345
00003345
?
?
1
Y Yang
0000003346
00003346
?
?
1
Y Yang
0000003347
00003347
?
?
1
Y Yang
0000003348
00003348
?
?
1
Y Yang
0000003349
00003349
?
?
1
Y Yang
0000003350
00003350
?
?
1
Y Yang
0000003351
00003351
?
?
1
Y Yang
0000003352
00003352
?
?
1
Y Yang
0000003353
00003353
?
?
1
Y Yang
0000003354
00003354
?
?
1
Y Yang
0000003355
00003355
?
?
1
Y Yang
0000003356
00003356
?
?
1
Y Yang
0000003357
00003357
?
?
1
Y Yang
0000003358
00003358
?
?
1
Y Yang
0000003359
00003359
?
?
1
Y Yang
0000003360
00003360
?
?
1
Y Yang
0000003361
00003361
?
?
1
Y Yang
0000003362
00003362
?
?
1
Y Yang
0000003363
00003363
?
?
1
Y Yang
0000003364
00003364
?
?
1
Y Yang
0000003365
00003365
?
?
1
Y Yang
0000003366
00003366
?
?
1
Y Yang
0000003367
00003367
?
?
1
Y Yang
0000003368
00003368
?
?
1
Y Yang
0000003369
00003369
?
?
1
Y Yang
0000003370
00003370
?
?
1
Y Yang
0000003371
00003371
?
?
1
Y Yang
0000003372
00003372
?
?
1
Y Yang
0000003373
00003373
?
?
1
Y Yang
0000003374
00003374
?
?
1
Y Yang
0000003375
00003375
?
?
1
Y Yang
0000003376
00003376
?
?
1
Y Yang
0000003377
00003377
?
?
1
Y Yang
0000003378
00003378
?
?
1
Y Yang
0000003379
00003379
?
?
1
Y Yang
0000003380
00003380
?
?
1
Y Yang
0000003381
00003381
?
?
1
Y Yang
0000003382
00003382
?
?
1
Y Yang
0000003383
00003383
?
?
1
Y Yang
0000003384
00003384
?
?
1
Y Yang
0000003385
00003385
?
?
1
Y Yang
0000003386
00003386
?
?
1
Y Yang
0000003387
00003387
?
?
1
Y Yang
0000003388
00003388
?
?
1
Y Yang
0000003389
00003389
?
?
1
Y Yang
0000003390
00003390
?
?
1
Y Yang
0000003391
00003391
?
?
1
Y Yang
0000003392
00003392
?
?
1
Y Yang
0000003393
00003393
?
?
1
Y Yang
0000003394
00003394
?
?
1
Y Yang
0000003395
00003395
?
?
1
Y Yang
0000003396
00003396
?
?
1
Y Yang
0000003397
00003397
?
?
1
Y Yang
0000003398
00003398
?
?
1
Y Yang
0000003399
00003399
?
?
1
Y Yang
0000003400
00003400
?
?
1
Y Yang
0000003401
00003401
?
?
1
Y Yang
0000003402
00003402
?
?
1
Y Yang
0000003403
00003403
?
?
1
Y Yang
0000003404
00003404
?
?
1
Y Yang
0000003405
00003405
?
?
1
Y Yang
0000003406
00003406
?
?
1
Y Yang
0000003407
00003407
?
?
1
Y Yang
0000003408
00003408
?
?
1
Y Yang
0000003409
00003409
?
?
1
Y Yang
0000003410
00003410
?
?
1
Y Yang
0000003411
00003411
?
?
1
Y Yang
0000003412
00003412
?
?
1
Y Yang
0000003413
00003413
?
?
1
Y Yang
0000003414
00003414
?
?
1
Y Yang
0000003415
00003415
?
?
1
Y Yang
0000003416
00003416
?
?
1
Y Yang
0000003417
00003417
?
?
1
Y Yang
0000003418
00003418
?
?
1
Y Yang
0000003419
00003419
?
?
1
Y Yang
0000003420
00003420
?
?
1
Y Yang
0000003421
00003421
?
?
1
Y Yang
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