NDDVD - Neurodegenerative Diseases Variation Database
OPA1 (optic atrophy 1 (autosomal dominant))
LOVD v.3.0 Build 29 [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Y Yang
View all genes
View OPA1 gene homepage
View graphs about the OPA1 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene OPA1
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene OPA1
View all variants in gene OPA1
Full data view for gene OPA1
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene OPA1
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene OPA1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene OPA1
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
All screenings for gene OPA1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
291 entries on 3 pages. Showing entries 1 - 100.
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
3
Next
Last »
Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000002954
00002954
?
?
1
Y Yang
0000002955
00002955
?
?
1
Y Yang
0000002956
00002956
?
?
1
Y Yang
0000002957
00002957
?
?
1
Y Yang
0000002958
00002958
?
?
1
Y Yang
0000002959
00002959
?
?
1
Y Yang
0000002960
00002960
?
?
1
Y Yang
0000002961
00002961
?
?
1
Y Yang
0000002962
00002962
?
?
1
Y Yang
0000002963
00002963
?
?
1
Y Yang
0000002964
00002964
?
?
1
Y Yang
0000002965
00002965
?
?
1
Y Yang
0000002966
00002966
?
?
1
Y Yang
0000002967
00002967
?
?
1
Y Yang
0000002968
00002968
?
?
1
Y Yang
0000002969
00002969
?
?
1
Y Yang
0000002970
00002970
?
?
1
Y Yang
0000002971
00002971
?
?
1
Y Yang
0000002972
00002972
?
?
1
Y Yang
0000002973
00002973
?
?
1
Y Yang
0000002974
00002974
?
?
1
Y Yang
0000002975
00002975
?
?
1
Y Yang
0000002976
00002976
?
?
1
Y Yang
0000002977
00002977
?
?
1
Y Yang
0000002978
00002978
?
?
1
Y Yang
0000002979
00002979
?
?
1
Y Yang
0000002980
00002980
?
?
1
Y Yang
0000002981
00002981
?
?
1
Y Yang
0000002982
00002982
?
?
1
Y Yang
0000002983
00002983
?
?
1
Y Yang
0000002984
00002984
?
?
1
Y Yang
0000002985
00002985
?
?
1
Y Yang
0000002986
00002986
?
?
1
Y Yang
0000002987
00002987
?
?
1
Y Yang
0000002988
00002988
?
?
1
Y Yang
0000002989
00002989
?
?
1
Y Yang
0000002990
00002990
?
?
1
Y Yang
0000002991
00002991
?
?
1
Y Yang
0000002992
00002992
?
?
1
Y Yang
0000002993
00002993
?
?
1
Y Yang
0000002994
00002994
?
?
1
Y Yang
0000002995
00002995
?
?
1
Y Yang
0000002996
00002996
?
?
1
Y Yang
0000002997
00002997
?
?
1
Y Yang
0000002998
00002998
?
?
1
Y Yang
0000002999
00002999
?
?
1
Y Yang
0000003000
00003000
?
?
1
Y Yang
0000003001
00003001
?
?
1
Y Yang
0000003002
00003002
?
?
1
Y Yang
0000003003
00003003
?
?
1
Y Yang
0000003004
00003004
?
?
1
Y Yang
0000003005
00003005
?
?
1
Y Yang
0000003006
00003006
?
?
1
Y Yang
0000003007
00003007
?
?
1
Y Yang
0000003008
00003008
?
?
1
Y Yang
0000003009
00003009
?
?
1
Y Yang
0000003010
00003010
?
?
1
Y Yang
0000003011
00003011
?
?
1
Y Yang
0000003012
00003012
?
?
1
Y Yang
0000003013
00003013
?
?
1
Y Yang
0000003014
00003014
?
?
1
Y Yang
0000003015
00003015
?
?
1
Y Yang
0000003016
00003016
?
?
1
Y Yang
0000003017
00003017
?
?
1
Y Yang
0000003018
00003018
?
?
1
Y Yang
0000003019
00003019
?
?
1
Y Yang
0000003020
00003020
?
?
1
Y Yang
0000003021
00003021
?
?
1
Y Yang
0000003022
00003022
?
?
1
Y Yang
0000003023
00003023
?
?
1
Y Yang
0000003024
00003024
?
?
1
Y Yang
0000003025
00003025
?
?
1
Y Yang
0000003026
00003026
?
?
1
Y Yang
0000003027
00003027
?
?
1
Y Yang
0000003028
00003028
?
?
1
Y Yang
0000003029
00003029
?
?
1
Y Yang
0000003030
00003030
?
?
1
Y Yang
0000003031
00003031
?
?
1
Y Yang
0000003032
00003032
?
?
1
Y Yang
0000003033
00003033
?
?
1
Y Yang
0000003034
00003034
?
?
1
Y Yang
0000003035
00003035
?
?
1
Y Yang
0000003036
00003036
?
?
1
Y Yang
0000003037
00003037
?
?
1
Y Yang
0000003038
00003038
?
?
1
Y Yang
0000003039
00003039
?
?
1
Y Yang
0000003040
00003040
?
?
1
Y Yang
0000003041
00003041
?
?
1
Y Yang
0000003042
00003042
?
?
1
Y Yang
0000003043
00003043
?
?
1
Y Yang
0000003044
00003044
?
?
1
Y Yang
0000003045
00003045
?
?
1
Y Yang
0000003046
00003046
?
?
1
Y Yang
0000003047
00003047
?
?
1
Y Yang
0000003048
00003048
?
?
1
Y Yang
0000003049
00003049
?
?
1
Y Yang
0000003050
00003050
?
?
1
Y Yang
0000003051
00003051
?
?
1
Y Yang
0000003052
00003052
?
?
1
Y Yang
0000003053
00003053
?
?
1
Y Yang
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
3
Next
Last »
Powered by
LOVD v.3.0
Build 29
LOVD software ©2004-2023
Leiden University Medical Center