NDDVD - Neurodegenerative Diseases Variation Database
PRNP (prion protein)
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Curator:
Y Yang
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View PRNP gene homepage
View graphs about the PRNP gene database
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View all transcripts
View all transcripts of gene PRNP
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View all variants
View all variants affecting transcripts
View unique variants in gene PRNP
View all variants in gene PRNP
Full data view for gene PRNP
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View active genomic custom columns
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View all individuals
View all individuals with variants in gene PRNP
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View all diseases
View all diseases associated with gene PRNP
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene PRNP
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Submit new data
All screenings for gene PRNP
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
119 entries on 2 pages. Showing entries 1 - 100.
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Legend
How to query
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Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000000986
00000986
?
?
1
Y Yang
0000000987
00000987
?
?
1
Y Yang
0000000988
00000988
?
?
1
Y Yang
0000000989
00000989
?
?
1
Y Yang
0000000990
00000990
?
?
1
Y Yang
0000000991
00000991
?
?
1
Y Yang
0000000992
00000992
?
?
1
Y Yang
0000000993
00000993
?
?
1
Y Yang
0000000994
00000994
?
?
1
Y Yang
0000000995
00000995
?
?
1
Y Yang
0000000996
00000996
?
?
1
Y Yang
0000000997
00000997
?
?
1
Y Yang
0000000998
00000998
?
?
1
Y Yang
0000000999
00000999
?
?
1
Y Yang
0000001000
00001000
?
?
1
Y Yang
0000001001
00001001
?
?
1
Y Yang
0000001002
00001002
?
?
1
Y Yang
0000001003
00001003
?
?
1
Y Yang
0000001004
00001004
?
?
1
Y Yang
0000001005
00001005
?
?
1
Y Yang
0000001006
00001006
?
?
1
Y Yang
0000001007
00001007
?
?
1
Y Yang
0000001012
00001012
?
?
1
Y Yang
0000001013
00001013
?
?
1
Y Yang
0000001014
00001014
?
?
1
Y Yang
0000001015
00001015
?
?
1
Y Yang
0000001016
00001016
?
?
1
Y Yang
0000001017
00001017
?
?
1
Y Yang
0000001018
00001018
?
?
1
Y Yang
0000001019
00001019
?
?
1
Y Yang
0000001020
00001020
?
?
1
Y Yang
0000001021
00001021
?
?
1
Y Yang
0000001022
00001022
?
?
1
Y Yang
0000001023
00001023
?
?
1
Y Yang
0000001024
00001024
?
?
1
Y Yang
0000001025
00001025
?
?
1
Y Yang
0000001026
00001026
?
?
1
Y Yang
0000001027
00001027
?
?
1
Y Yang
0000001028
00001028
?
?
1
Y Yang
0000001029
00001029
?
?
1
Y Yang
0000001030
00001030
?
?
1
Y Yang
0000001031
00001031
?
?
1
Y Yang
0000001032
00001032
?
?
1
Y Yang
0000001033
00001033
?
?
1
Y Yang
0000001034
00001034
?
?
1
Y Yang
0000001035
00001035
?
?
1
Y Yang
0000001036
00001036
?
?
1
Y Yang
0000001037
00001037
?
?
1
Y Yang
0000001038
00001038
?
?
1
Y Yang
0000001039
00001039
?
?
1
Y Yang
0000001040
00001040
?
?
1
Y Yang
0000001041
00001041
?
?
1
Y Yang
0000001305
00001305
?
?
1
Y Yang
0000001306
00001306
?
?
1
Y Yang
0000001307
00001307
?
?
1
Y Yang
0000001308
00001308
?
?
1
Y Yang
0000001309
00001309
?
?
1
Y Yang
0000001310
00001310
?
?
1
Y Yang
0000001473
00001473
?
?
1
Y Yang
0000001474
00001474
?
?
1
Y Yang
0000001475
00001475
?
?
1
Y Yang
0000001476
00001476
?
?
1
Y Yang
0000001477
00001477
?
?
1
Y Yang
0000001478
00001478
?
?
1
Y Yang
0000001479
00001479
?
?
1
Y Yang
0000001480
00001480
?
?
1
Y Yang
0000001481
00001481
?
?
1
Y Yang
0000001482
00001482
?
?
1
Y Yang
0000001483
00001483
?
?
1
Y Yang
0000001484
00001484
?
?
1
Y Yang
0000001485
00001485
?
?
1
Y Yang
0000001486
00001486
?
?
1
Y Yang
0000001487
00001487
?
?
1
Y Yang
0000001488
00001488
?
?
1
Y Yang
0000001489
00001489
?
?
1
Y Yang
0000001490
00001490
?
?
1
Y Yang
0000001491
00001491
?
?
1
Y Yang
0000001492
00001492
?
?
1
Y Yang
0000001493
00001493
?
?
1
Y Yang
0000001494
00001494
?
?
1
Y Yang
0000001495
00001495
?
?
1
Y Yang
0000001713
00001713
?
?
1
Y Yang
0000001930
00001930
?
?
1
Y Yang
0000002212
00002212
?
?
1
Y Yang
0000005165
00005162
?
?
1
XY Liu
0000005166
00005163
?
?
1
XY Liu
0000005167
00005164
?
?
1
XY Liu
0000005168
00005165
?
?
1
XY Liu
0000005173
00005170
?
?
1
XY Liu
0000005440
00005429
?
?
1
XY Liu
0000005441
00005430
?
?
1
XY Liu
0000005442
00005431
?
?
1
XY Liu
0000005443
00005432
?
?
1
XY Liu
0000005444
00005433
?
?
1
XY Liu
0000005445
00005434
?
?
1
XY Liu
0000005446
00005435
?
?
1
XY Liu
0000005447
00005436
?
?
2
XY Liu
0000005448
00005437
?
?
1
XY Liu
0000005449
00005438
?
?
1
XY Liu
0000005450
00005439
?
?
1
XY Liu
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