NDDVD - Neurodegenerative Diseases Variation Database
PSEN1 (presenilin 1)
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Curator:
Y Yang
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View PSEN1 gene homepage
View graphs about the PSEN1 gene database
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View all transcripts
View all transcripts of gene PSEN1
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View all variants
View all variants affecting transcripts
View unique variants in gene PSEN1
View all variants in gene PSEN1
Full data view for gene PSEN1
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View all individuals with variants in gene PSEN1
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View all diseases
View all diseases associated with gene PSEN1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene PSEN1
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All screenings for gene PSEN1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
380 entries on 4 pages. Showing entries 1 - 100.
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Legend
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Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000000109
00000109
?
?
1
Y Yang
0000000110
00000110
?
?
1
Y Yang
0000000111
00000111
?
?
1
Y Yang
0000000112
00000112
?
?
1
Y Yang
0000000113
00000113
?
?
1
Y Yang
0000000114
00000114
?
?
1
Y Yang
0000000115
00000115
?
?
1
Y Yang
0000000116
00000116
?
?
1
Y Yang
0000000117
00000117
?
?
1
Y Yang
0000000118
00000118
?
?
1
Y Yang
0000000119
00000119
?
?
1
Y Yang
0000000120
00000120
?
?
1
Y Yang
0000000121
00000121
?
?
1
Y Yang
0000000122
00000122
?
?
1
Y Yang
0000000123
00000123
?
?
1
Y Yang
0000000124
00000124
?
?
1
Y Yang
0000000125
00000125
?
?
1
Y Yang
0000000126
00000126
?
?
1
Y Yang
0000000127
00000127
?
?
1
Y Yang
0000000128
00000128
?
?
1
Y Yang
0000000129
00000129
?
?
1
Y Yang
0000000130
00000130
?
?
1
Y Yang
0000000131
00000131
?
?
1
Y Yang
0000000132
00000132
?
?
1
Y Yang
0000000133
00000133
?
?
1
Y Yang
0000000134
00000134
?
?
1
Y Yang
0000000135
00000135
?
?
1
Y Yang
0000000136
00000136
?
?
1
Y Yang
0000000137
00000137
?
?
1
Y Yang
0000000138
00000138
?
?
1
Y Yang
0000000139
00000139
?
?
1
Y Yang
0000000140
00000140
?
?
1
Y Yang
0000000141
00000141
?
?
1
Y Yang
0000000142
00000142
?
?
1
Y Yang
0000000143
00000143
?
?
1
Y Yang
0000000144
00000144
?
?
1
Y Yang
0000000145
00000145
?
?
1
Y Yang
0000000146
00000146
?
?
1
Y Yang
0000000147
00000147
?
?
1
Y Yang
0000000148
00000148
?
?
1
Y Yang
0000000149
00000149
?
?
1
Y Yang
0000000150
00000150
?
?
1
Y Yang
0000000151
00000151
?
?
1
Y Yang
0000000152
00000152
?
?
1
Y Yang
0000000153
00000153
?
?
1
Y Yang
0000000154
00000154
?
?
1
Y Yang
0000000155
00000155
?
?
1
Y Yang
0000000156
00000156
?
?
1
Y Yang
0000000157
00000157
?
?
1
Y Yang
0000000158
00000158
?
?
1
Y Yang
0000000159
00000159
?
?
1
Y Yang
0000000160
00000160
?
?
1
Y Yang
0000000161
00000161
?
?
1
Y Yang
0000000162
00000162
?
?
1
Y Yang
0000000163
00000163
?
?
1
Y Yang
0000000164
00000164
?
?
1
Y Yang
0000000165
00000165
?
?
1
Y Yang
0000000166
00000166
?
?
1
Y Yang
0000000167
00000167
?
?
1
Y Yang
0000000168
00000168
?
?
1
Y Yang
0000000169
00000169
?
?
1
Y Yang
0000000170
00000170
?
?
1
Y Yang
0000000171
00000171
?
?
1
Y Yang
0000000172
00000172
?
?
1
Y Yang
0000000173
00000173
?
?
1
Y Yang
0000000174
00000174
?
?
1
Y Yang
0000000175
00000175
?
?
1
Y Yang
0000000176
00000176
?
?
1
Y Yang
0000000177
00000177
?
?
1
Y Yang
0000000178
00000178
?
?
1
Y Yang
0000000179
00000179
?
?
1
Y Yang
0000000180
00000180
?
?
1
Y Yang
0000000181
00000181
?
?
1
Y Yang
0000000182
00000182
?
?
1
Y Yang
0000000183
00000183
?
?
1
Y Yang
0000000184
00000184
?
?
1
Y Yang
0000000185
00000185
?
?
1
Y Yang
0000000186
00000186
?
?
1
Y Yang
0000000187
00000187
?
?
1
Y Yang
0000000188
00000188
?
?
1
Y Yang
0000000189
00000189
?
?
1
Y Yang
0000000190
00000190
?
?
1
Y Yang
0000000191
00000191
?
?
1
Y Yang
0000000192
00000192
?
?
1
Y Yang
0000000193
00000193
?
?
1
Y Yang
0000000194
00000194
?
?
1
Y Yang
0000000195
00000195
?
?
1
Y Yang
0000000196
00000196
?
?
1
Y Yang
0000000197
00000197
?
?
1
Y Yang
0000000198
00000198
?
?
1
Y Yang
0000000211
00000211
?
?
1
Y Yang
0000000212
00000212
?
?
1
Y Yang
0000000213
00000213
?
?
1
Y Yang
0000000214
00000214
?
?
1
Y Yang
0000000215
00000215
?
?
1
Y Yang
0000000216
00000216
?
?
1
Y Yang
0000000217
00000217
?
?
1
Y Yang
0000000218
00000218
?
?
1
Y Yang
0000000219
00000219
?
?
1
Y Yang
0000000220
00000220
?
?
1
Y Yang
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