NDDVD - Neurodegenerative Diseases Variation Database
SNCA (synuclein, alpha (non A4 component of amyloi...))
LOVD v.3.0 Build 29 [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Y Yang
View all genes
View SNCA gene homepage
View graphs about the SNCA gene database
Create a new gene entry
View all transcripts
View all transcripts of gene SNCA
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene SNCA
View all variants in gene SNCA
Full data view for gene SNCA
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene SNCA
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene SNCA
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene SNCA
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
All screenings for gene SNCA
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
34 entries on 1 page. Showing entries 1 - 34.
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000002207
00002207
?
?
1
Y Yang
0000002208
00002208
?
?
1
Y Yang
0000003739
00003739
?
?
1
Y Yang
0000003740
00003740
?
?
1
Y Yang
0000003741
00003741
?
?
1
Y Yang
0000003742
00003742
?
?
1
Y Yang
0000003754
00003754
?
?
1
Y Yang
0000003755
00003755
?
?
1
Y Yang
0000003756
00003756
?
?
1
Y Yang
0000003757
00003757
?
?
1
Y Yang
0000003807
00003807
?
?
1
Y Yang
0000003808
00003808
?
?
1
Y Yang
0000003809
00003809
?
?
1
Y Yang
0000003810
00003810
?
?
1
Y Yang
0000003811
00003811
?
?
1
Y Yang
0000003812
00003812
?
?
1
Y Yang
0000003813
00003813
?
?
1
Y Yang
0000005797
00005781
?
?
1
XY Liu
0000005798
00005782
?
?
1
XY Liu
0000005800
00005784
?
?
1
XY Liu
0000005801
00005785
?
?
1
XY Liu
0000005802
00005786
?
?
1
XY Liu
0000005803
00005787
?
?
1
XY Liu
0000005804
00005788
?
?
1
XY Liu
0000005805
00005789
?
?
1
XY Liu
0000005809
00005793
?
?
1
XY Liu
0000005815
00005799
?
?
1
XY Liu
0000005816
00005800
?
?
1
XY Liu
0000005817
00005801
?
?
1
XY Liu
0000005818
00005802
?
?
1
XY Liu
0000005819
00005803
?
?
1
XY Liu
0000005820
00005804
?
?
1
XY Liu
0000005821
00005805
?
?
1
XY Liu
0000006126
00006104
?
?
1
XY Liu
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
Powered by
LOVD v.3.0
Build 29
LOVD software ©2004-2023
Leiden University Medical Center