NDDVD - Neurodegenerative Diseases Variation Database
TARDBP (TAR DNA binding protein)
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Curator:
Y Yang
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View all transcripts of gene TARDBP
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View all variants affecting transcripts
View unique variants in gene TARDBP
View all variants in gene TARDBP
Full data view for gene TARDBP
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View all individuals with variants in gene TARDBP
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View all diseases associated with gene TARDBP
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View available phenotype columns
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View all screenings for gene TARDBP
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All screenings for gene TARDBP
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
130 entries on 2 pages. Showing entries 1 - 100.
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Legend
How to query
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Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000000582
00000582
?
?
1
Y Yang
0000000583
00000583
?
?
1
Y Yang
0000000584
00000584
?
?
1
Y Yang
0000000585
00000585
?
?
1
Y Yang
0000000586
00000586
?
?
1
Y Yang
0000000587
00000587
?
?
1
Y Yang
0000000588
00000588
?
?
1
Y Yang
0000000589
00000589
?
?
1
Y Yang
0000000590
00000590
?
?
1
Y Yang
0000000591
00000591
?
?
1
Y Yang
0000000592
00000592
?
?
1
Y Yang
0000000593
00000593
?
?
1
Y Yang
0000000594
00000594
?
?
1
Y Yang
0000000595
00000595
?
?
1
Y Yang
0000000596
00000596
?
?
1
Y Yang
0000000597
00000597
?
?
1
Y Yang
0000000598
00000598
?
?
1
Y Yang
0000000600
00000600
?
?
1
Y Yang
0000000602
00000602
?
?
1
Y Yang
0000000603
00000603
?
?
1
Y Yang
0000000604
00000604
?
?
1
Y Yang
0000000700
00000700
?
?
1
Y Yang
0000000701
00000701
?
?
1
Y Yang
0000000702
00000702
?
?
1
Y Yang
0000000703
00000703
?
?
1
Y Yang
0000000704
00000704
?
?
1
Y Yang
0000000705
00000705
?
?
1
Y Yang
0000000707
00000707
?
?
1
Y Yang
0000000708
00000708
?
?
1
Y Yang
0000000709
00000709
?
?
1
Y Yang
0000000710
00000710
?
?
1
Y Yang
0000000711
00000711
?
?
1
Y Yang
0000000713
00000713
?
?
1
Y Yang
0000000715
00000715
?
?
1
Y Yang
0000000720
00000720
?
?
2
Y Yang
0000000721
00000721
?
?
1
Y Yang
0000000722
00000722
?
?
1
Y Yang
0000000723
00000723
?
?
1
Y Yang
0000000795
00000795
?
?
1
Y Yang
0000000796
00000796
?
?
1
Y Yang
0000000797
00000797
?
?
1
Y Yang
0000001416
00001416
?
?
1
Y Yang
0000001417
00001417
?
?
1
Y Yang
0000001418
00001418
?
?
1
Y Yang
0000001420
00001420
?
?
1
Y Yang
0000001421
00001421
?
?
1
Y Yang
0000001422
00001422
?
?
1
Y Yang
0000001424
00001424
?
?
1
Y Yang
0000001425
00001425
?
?
1
Y Yang
0000001426
00001426
?
?
1
Y Yang
0000001428
00001428
?
?
1
Y Yang
0000001465
00001465
?
?
1
Y Yang
0000005222
00005219
?
?
1
XY Liu
0000005260
00005257
?
?
1
XY Liu
0000005261
00005258
?
?
1
XY Liu
0000005385
00005381
?
?
1
XY Liu
0000005386
00005382
?
?
1
XY Liu
0000005387
00005383
?
?
1
XY Liu
0000005388
00005384
?
?
1
XY Liu
0000005565
00005553
?
?
1
XY Liu
0000006051
00006030
?
?
1
XY Liu
0000006097
00006075
?
?
1
XY Liu
0000006284
00006261
?
?
1
XY Liu
0000006285
00006262
?
?
1
XY Liu
0000006286
00006263
?
?
1
XY Liu
0000006287
00006264
?
?
1
XY Liu
0000006288
00006265
?
?
1
XY Liu
0000006293
00006270
?
?
1
XY Liu
0000006294
00006271
?
?
1
XY Liu
0000006295
00006272
?
?
1
XY Liu
0000006296
00006273
?
?
1
XY Liu
0000006297
00006274
?
?
1
XY Liu
0000006298
00006275
?
?
1
XY Liu
0000006299
00006276
?
?
1
XY Liu
0000006300
00006277
?
?
1
XY Liu
0000006301
00006278
?
?
1
XY Liu
0000006302
00006279
?
?
1
XY Liu
0000006303
00006280
?
?
1
XY Liu
0000006304
00006281
?
?
1
XY Liu
0000006305
00006282
?
?
1
XY Liu
0000006306
00006283
?
?
1
XY Liu
0000006307
00006284
?
?
1
XY Liu
0000006318
00006295
?
?
1
XY Liu
0000006326
00006303
?
?
1
XY Liu
0000006327
00006304
?
?
1
XY Liu
0000006328
00006305
?
?
1
XY Liu
0000006329
00006306
?
?
1
XY Liu
0000006344
00006321
?
?
1
XY Liu
0000006367
00006344
?
?
1
XY Liu
0000006372
00006349
?
?
1
XY Liu
0000006373
00006350
?
?
1
XY Liu
0000006381
00006358
?
?
1
XY Liu
0000006382
00006359
?
?
1
XY Liu
0000006383
00006360
?
?
1
XY Liu
0000006384
00006361
?
?
1
XY Liu
0000006392
00006369
?
?
1
XY Liu
0000006409
00006385
?
?
1
XY Liu
0000006419
00006395
?
?
2
XY Liu
0000006420
00006396
?
?
2
XY Liu
0000006440
00006416
?
?
1
XY Liu
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