NDDVD - Neurodegenerative Diseases Variation Database
MAPT (microtubule-associated protein tau)
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Curator:
Y Yang
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View all transcripts of gene MAPT
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View all variants in gene MAPT
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View all diseases associated with gene MAPT
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Unique variants in the MAPT gene
The variants shown are described using the
NM_005910.5
NM_001123066.3
NM_016835.4
transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Reported
: The number of times this variant has been reported in the database.
Exon
: Number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = exons 3 to 7, 8i_9 = border intron 8/exon 9.
DNA change (cDNA)
: Description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup.
RNA change
: Description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: Description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
Variant/VariO/DNA
: VariO of DNA
Variant/VariO/protein
: VariO of protein
DNA change (genomic) (hg19)
: Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
g.12345678C>T
g.12345678_12345890del
g.12345678_12345890dup
Reference
: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID
: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
Frequency
: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
47 entries on 1 page. Showing entries 1 - 47.
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How to query
Effect
Reported
Exon
DNA change (cDNA)
RNA change
Protein
Variant/VariO/DNA
Variant/VariO/protein
DNA change (genomic) (hg19)
Reference
DB-ID
Frequency
Owner
./.
1
10
c.?
r.exon 10 skipping
P.?
-
-
G.?
Luo Y et al. (2014)
GRN_000076
-
XY Liu
./.
1
2
c.14G>A
r.(?)
p.(Arg5His)
-
-
g.44039717G>A
1 more item
MAPT_000015
-
Y Yang
./.
1
3
c.163G>C
r.(?)
p.(Gly55Arg)
-
-
g.44049254G>C
Iyer A et al. (2013)
MAPT_000058
-
XY Liu
./.
1
4
c.224T>C
r.(?)
p.(Val75Ala)
-
-
g.44051754T>C
1 more item
MAPT_000022
-
Y Yang
./.
5
7
c.454G>A
r.(?)
p.(Ala152Thr)
-
-
g.44068850G>A
Kovacs GG et al.(2011)
,
Coppola G et al. (2012)
,
Lee SE et aL. (2013)
,
Pastor P et al. (2016)
,
1 more item
MAPT_000053
-
XY Liu
./.
1
8
c.770A>C
r.(?)
p.(Lys257Thr)
-
-
g.44073978A>C
1 more item
MAPT_000018
-
Y Yang
./.
1
8
c.778A>G
r.(?)
p.(Ile260Val)
-
-
g.44073986A>G
Grover A et al. (2003)
MAPT_000064
-
XY Liu
./.
1
8
c.796C>G
r.(?)
p.(Leu266Val)
-
-
g.44074004C>G
1 more item
MAPT_000016
-
Y Yang
./.
1
8
c.815G>T
r.(?)
p.(Gly272Val)
-
-
g.44074023G>T
1 more item
MAPT_000002
-
Y Yang
./.
1
8
c.817G>C
r.(?)
p.(Gly273Arg)
-
-
g.44074025G>C
van der Zee J et al. (2006)
MAPT_000065
-
XY Liu
./.
5
9
c.837T>A
r.(?)
p.(Asn279Lys)
-
-
g.44087690T>A
Whitwell JL et al. (2011)
,
Wren MC et al. (2015)
,
dbSNP
,
Takada LT et al. (2016)
,
2 more items
MAPT_000010
-
Y Yang
,
XY Liu
./.
1
10
c.838_840delAAG
r.(?)
p.(Lys280del)
-
-
g.44087691_44087693delAAG
Rizzu P et al. (1999)
MAPT_000074
-
XY Liu
./.
1
9
c.851T>G
r.(?)
p.(Leu284Arg)
-
-
g.44087704T>G
Rohrer JD1, Paviour D, Vandrovcova J, Hodges J, de Silva R, Rossor MN.(2011)
MAPT_000044
-
Y Yang
./.
1
9
c.886A>C
r.(?)
p.(Asn296His)
-
-
g.44087739A>C
1 more item
MAPT_000019
-
Y Yang
./.
1
9
c.886A>G
r.(?)
p.(Asn296Asp)
-
-
g.44087739A>G
Cohn-Hokke PE et al. (2014)
MAPT_000066
-
XY Liu
./.
2
9
c.888T>A
r.(?)
p.(Asn296Lys)
-
-
g.44087741T>A
Brown J1, Lantos PL, Roques P, Fidani L, Rossor MN.(1996)
,
1 more item
MAPT_000013
-
Y Yang
./.
1
9
c.901C>A
r.(?)
p.(Pro301Thr)
-
-
g.44087754C>A
Lladó A, Ezquerra M, Sánchez-Valle R, Rami L, Tolosa E, Molinuevo JL.(2007)
MAPT_000008
-
Y Yang
./.
2
9
c.901C>T
r.(?)
p.(Pro301Ser)
-
-
g.44087754C>T
Bellucci A et al. (2011)
,
1 more item
MAPT_000012
-
Y Yang
,
XY Liu
./.
8
9
c.902C>T
r.(?)
p.(Pro301Leu)
-
-
g.44087755C>T
Whitwell JL et al. (2011)
,
Schulz KL et al. (2012)
,
Sitek EJ et al. (2014)
,
Kimura T et al. (2013)
,
4 more items
MAPT_000001
-
Y Yang
,
XY Liu
./.
1
9
c.903G>A
r.(=)
p.(=)
-
-
g.44087756G>A
Miyamoto K et al. (2011)
MAPT_000067
-
XY Liu
./.
1
9
c.908G>T
r.(?)
p.(Gly303Val)
-
-
g.44087761G>T
1 more item
MAPT_000043
-
Y Yang
./.
2
9
c.914G>A
r.(?)
p.(Ser305Asn)
-
-
g.44087767G>A
Whitwell JL et al. (2011)
,
1 more item
MAPT_000011
-
Y Yang
,
XY Liu
./.
1
9
c.914G>T
r.(?)
p.(Ser305Ile)
-
-
g.44087767G>T
Nimsanor N et al. (2016)
MAPT_000059
-
XY Liu
./.
1
IVS10
c.915+11T>C
r.(=)
p.(=)
-
-
g.44087779T>C
Miyamoto K et al. (2011)
MAPT_000035
-
XY Liu
./.
1
IVS10
c.915+15A>C
r.(=)
p.(=)
-
-
g.44087783A>C
McCarthy A et al. (2015)
MAPT_000075
-
XY Liu
./.
1
IVS10
c.915+16C>T
r.(=)
p.(=)
-
-
g.44087784C>T
Takada LT et al. (2016)
MAPT_000031
-
XY Liu
./.
1
10
c.944T>G
r.(?)
p.(Leu315Arg)
-
-
g.44091637T>G
van Herpen E et al. (2003)
MAPT_000068
-
XY Liu
./.
1
10
c.950A>T
r.(?)
p.(Lys317Met)
-
-
g.44091643A>T
1 more item
MAPT_000017
-
Y Yang
./.
1
10
c.959C>T
r.(?)
p.(Ser320Phe)
-
-
g.44091652C>T
1 more item
MAPT_000005
-
Y Yang
./.
1
10
c.994C>T
r.(?)
p.(Pro332Ser)
-
-
g.44091687C>T
Deramecourt V et al. (2012)
MAPT_000069
-
XY Liu
./.
1
11
c.1003G>A
r.(?)
p.(Gly335Ser)
-
-
g.44095989G>A
Spina S et al. (2007)
MAPT_000070
-
XY Liu
./.
1
11
c.1004G>T
r.(?)
p.(Gly335Val)
-
-
g.44095990G>T
Neumann M1, Diekmann S, Bertsch U, Vanmassenhove B, Bogerts B, Kretzschmar HA.(2005)
MAPT_000006
-
Y Yang
./.
1
11
c.1007A>G
r.(?)
p.(Gln336Arg)
-
-
g.44095993A>G
1 more item
MAPT_000021
-
Y Yang
./.
1
11
c.1008G>T
r.(?)
p.(Gln336His)
-
-
g.44095994G>T
Tacik P et al. (2015)
MAPT_000071
-
XY Liu
./.
3
11
c.1009G>A
r.(?)
p.(Val337Met)
-
-
g.44095995G>A
Domoto-Reilly K et al. (2017)
,
Spina S et al. (2017)
,
1 more item
MAPT_000009
-
Y Yang
,
XY Liu
./.
1
11
c.1025A>T
r.(?)
p.(Glu342Val)
-
-
g.44096011A>T
1 more item
MAPT_000014
-
Y Yang
?/.
1
11
c.1043A>G
r.(1043a>g)
p.(Asp348Gly)
-
-
g.44096029A>G
Paola Origone, et al. (2018)
MAPT_000076
-
XY Liu
./.
1
11
c.1052A>G
r.(?)
p.(Gln351Arg)
-
-
g.44096038A>G
Liang Y et al. (2014)
MAPT_000057
-
XY Liu
./.
1
11
c.1066T>A
r.(?)
p.(Ser356Thr)
-
-
g.44096052T>A
Momeni P1, Wickremaratchi MM, Bell J, Arnold R, Beer R, Hardy J, Revesz T, Neal JW, Morris HR.(2010)
MAPT_000023
-
Y Yang
./.
2
11
c.1087G>A
r.(?)
p.(Val363Ile)
-
-
g.44096073G>A
Anfossi M et aL. (2011)
,
1 more item
MAPT_000024
-
Y Yang
,
XY Liu
./.
1
11
c.1090C>T
r.(?)
p.(Pro364Ser)
-
-
g.44096076C>T
Rossi G et al. (2012)
MAPT_000072
-
XY Liu
./.
1
11
c.1096G>C
r.(?)
p.(Gly366Arg)
-
-
g.44096082G>C
Rossi G et al. (2012)
MAPT_000073
-
XY Liu
./.
1
11
c.1106A>T
r.(?)
p.(Lys369Ile)
-
-
g.44096092A>T
1 more item
MAPT_000020
-
Y Yang
./.
1
12
c.1165G>A
r.(?)
p.(Gly389Arg)
-
-
g.44101376G>A
Sun L et al. (2017)
MAPT_000060
-
XY Liu
./.
2
12
c.1165G>C
r.(?)
p.(Gly389Arg)
-
-
g.44101376G>C
Whitwell JL et al. (2011)
,
1 more item
MAPT_000004
-
Y Yang
,
XY Liu
./.
10
12, 8
c.1216C>T
r.(?)
p.(Arg406Trp)
-
-
g.44101427C>T
Ikeuchi T et al. (2011)
,
Gauthier-Kemper A et al. (2011)
,
Kimura T et al. (2013)
,
7 more items
MAPT_000003, MAPT_000052
-
Y Yang
,
XY Liu
./.
1
12
c.1280C>T
r.(?)
p.(Thr427Met)
-
-
g.44101491C>T
1 more item
MAPT_000007
-
Y Yang
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