第3章

参考文献：第3章 碱基识别


Erlich, Y., et al. 2008. Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nat Methods. 5(8): 679-682. [PubMed]

Kao, W. C. and Y. S. Song. 2011. naiveBayesCall: an efficient model-based base-calling algorithm for high-throughput sequencing. J Comput Biol. 18(3): 365-377. [PubMed]

Kao, W. C., et al. 2009. BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing. Genome Res. 19(10): 1884-1895. [PubMed]

Kircher, M., et al. 2009. Improved base calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol. 10(8): R83. [PubMed]

Ledergerber, C. and C. Dessimoz. 2011. Base-calling for next-generation sequencing platforms. Brief Bioinform. 12(5): 489-497. [PubMed]

Li, L. and T. P. Speed. 1999. An estimate of the crosstalk matrix in four-dye fluorescence-based DNA sequencing. Electrophoresis. 20(7): 1433-1442. [PubMed]

Rougemont, J., et al. 2008. Probabilistic base calling of Solexa sequencing data. BMC Bioinformatics. 9: 431. [PubMed]

Sanger, F., et al. 1977. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 74(12): 5463-5467. [PubMed]

Shendure, J. and H. Ji. 2008. Next-generation DNA sequencing. Nat Biotechnol. 26(10): 1135-1145. [PubMed]

Whiteford, N., et al. 2009. Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinformatics. 25(17): 2194-2199. [PubMed]